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PCR: Degenerate PCR
Cloning and subcloning
DNA: DNA mutagenesis
Cloning and subcloning: Cloning vectors
Cloning and subcloning: PCR cloning

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PCR primer design software and online tools - http://methods-techniques.org/pcr/

Category: PCR: PCR primer design

Online PCR primer design tools

  • Primer 3
  • The famouse primer design program designed by Steve Rozen and Whitehead Institute for Biomedical Research.
  • CODEHOP
  • Introduction: The CODEHOP program designs PCR (Polymerase Chain Reaction) primers from protein multiple-sequence alignments. The program is intended for cases where the protein sequences are distant from each other and degenerate primers are needed.
  • Gene Fisher
  • Introduction: This online PCR primer design program processes aligned or unaligned amino acid or nucleotide sequences. It can also be used for degenerate primer design.
  • Doprimer
  • Introduction: Doprimer primer design tool can be used for applications targeted on whole genomes or parts of genomes.
  • Web Primer
  • This program can design PCR and DNA sequencing primer.
  • PCR Designer for Restriction Analysis of Sequence Mutations
  • This primer design tool is for restriction analysis of polymorphisms (SNPs). Reference: Bioinformatic tools and guideline for PCR primer design (PDF file) (By Kamel A. Abd-Elsalam)

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