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IHC- brown bubbles all over tissue

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HI,

I study fetal lungs, and my antibodies are againt glucorticoid receptors.. I see brown-red bubbles all over my tissue that affect my ability to focus with the microscope.. I know they are not the positive staining. Also there are dark blotches on the tissue. I used methyl green fro counter staining... n e ideas what they cld be?

thanks
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