:: Search forums  :: Top Users  :: Reagent

Position: Discussion forums > Bioscience biotechniques discussion forums > Bioinformatics forum and biostatistics forum
Goto Thread: Previous > Next
Goto: Forum List > Message List > > Search > Log In /or Register new user
Building Suffix Trees using DNA sequences
Posted by: Franziss (IP Hidden, New member, 0)
Date: September 19, 2004 11:43AM

Hi!

I am a 'newbie' in bioinformatics and I have been using Windows all my life.

If you do not mind, I hope you
can help me out. I am now working on a project in building suffix tree using DNA sequences

This is my knowledge of building a suffix tree using DNA sequences:
1)Go to NCBI Genbank FTP site to download files which contain the
genomes in FLASTA format
2)Setup a PC with linux OS that includes a C or C++ compiler as most
suffix tree construction codes are in C or C++
3) Run the program with the flat file and benchmark the suffix tree
construction results using some benchmarking program

Is this roughly the correct procedure? Is there any websites or docs
which serves as a guideline on how to go about doing it?



 

> >


Goto: Forum List•Message List•Search•Log In
We are moving ... Please post to our new community forums