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    Clustering small DNA sequences into groups
    Posted by: biotech_sm (IP Hidden, New member, 3)
    Date: August 9, 2005 08:51AM


    Hi,

    I have a set of small DNA sequences 6-10 nucleotides, lets say 40 of them. I wish to use some tool to cluster them into groups ... based on sequence. Can anyone suggest some useful tool for this purpose.

    Thanks,
    Sumit

     

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    Re: Clustering small DNA sequences into groups
    Posted by: simon (IP Hidden, Unregistered user, )
    Date: August 10, 2005 05:38AM

    Are those sequences from different species? I am not sure if ClustalW and Phylogeny tree are suitable tools for your purpose. ClustalW aligns multiple sequences and Phylogeny construct cluster tree representing the evolutionary distance between different sequences.

     

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    Re: Clustering small DNA sequences into groups
    Posted by: biotech_sm (IP Hidden, New member, 3)
    Date: August 10, 2005 10:44AM


    No. The sequences are from the same species. They are a collection of TFBSs which we wish to group into families.

    ------------------
    Are those sequences from different species? I am not sure if ClustalW and Phylogeny tree are suitable tools for your purpose. ClustalW aligns multiple sequences and Phylogeny construct cluster tree representing the evolutionary distance between different sequences.

     

    > >

    Re: Clustering small DNA sequences into groups
    Posted by: rakesh raul (IP Hidden, Unregistered user, )
    Date: November 14, 2005 05:55AM

    sir,
    I am a student of GEC,Farmagudi,Goa.I am doing my engineering and right now in final year of information technology.I am doing my final year project title:clustering of DNA sequences into meanigful groups for that i want yours help.sir if u have any better algorithm to cluster the DNA sequences & any information regarding over project then please send me on above e-mail,suggest two three algorithm so that we can choose the best one.

    yours sincerely,


    rakesh raul

     

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