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    Finding Secondary Structure of a Protein
    Posted by: nhabibi (IP Hidden, New member, 1)
    Date: April 17, 2008 12:41PM

    Hi everybody,

    I want to write a program to predict the contact map of proteins. It uses some features as Neural Network input. One of them is Secondary structure. I know that a popular method is DSSP. I got the previously calculated dssp file for some proteins form the internet, but they don't match with their pdb files. for example you can compare the 1a1v.pdb and 1a1v.dssp, the dssp file is longer!
    Another way, I think, is to use the dssp program directly, but I can't fine a free version on th internet. Can anybody help me? I really need it. glare.gif

    Thanks

     

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