Technique / Bioinformatics

Bioinformatics tutorial online lecture


Bioinformatics tutorial online lecture (archive)

Online lecture on bioinformatics from Max Planck Institute.

Content:

Biological preliminaries
Introduction
References
Exercises
Answers
Analysis of individual sequences
Introduction
Helical wheels, amphipatic helices and coiled-coils
References
Exercises
Pairwise sequence comparison
Introduction
Dot plots
Sequence Alignment
References
Exercises
Answers
Algorithms for the comparison of two sequences
Introduction: Type I and type II alignments
Type I alignment
Type II alignment
General gap functions for type II alignments
Minimum distance alignments
Minimum distance alignment score as a metric on sequences
References
Suboptimal Alignments
Introduction
Suboptimal points
Suboptimal Alignments
Stability
Application
References
Variants of the dynamic programming algorithm
Introduction
Free end-gaps
Local Alignments
Suboptimal Alignments
Similarity and Distance
Parametric Alignments
Linear in Space Algorithm
Practical Sections on Pairwise Alignments
Alignment Applet
Alignment Quiz
Multiple sequence alignment
Introduction
References
Exercises
Algorithms for SP-optimal multiple alignments
Definition
Motivation
Score functions
Problem
The exact solution
Saving space
Affine gap-costs
Reduction of search space
Divide-and-Conquer Alignment
References
Phylogenetic Trees and Multiple Alignments
Evolution
Ultrametric Trees
Iterative alignment strategy
Additive trees
Reconstruction of additive trees
Approximating additive metrics
Heuristics
Character-based methods for Phylogeny Construction
Parsimony
Protein Structure
Introduction
Different Levels of Protein Structure
Prediction Methods
Secondary Structure Prediction
Comparative Modelling
References
Related Links
Exercises
Links

Last update 03-Mar-2005, Rating Fair of 11 votes.

Write your comment

By kusum rawat on 11-Feb-2009
i want to know nature of Biological data, Overview of Bioinformatics, NCBI, EBI, ExPASY
Rating: n/a

Reply
By sara on 22-Sep-2008
I need informations about Correlation structure-function, bond stretching, AMBER and Free energy calculation.
Does anybody know tools or tutorial?
Rating: n/a

Reply
By saidur rahman on 24-Mar-2008
Hi
i want to know about bioinfomatics.please give me some tropics about it.
Rating: n/a

Reply
By bharathy on 28-Jan-2008
need help!
how to find linkage region?
is there any tools available?
plz do help me
Rating: Good

Reply
By bobby on 31-Jul-2007
what is pharmacophore and this is used for drug designing?
Rating: Excellent!

Reply
By myuminnlwin on 13-Dec-2006
doing research in bioinformatics,need help.
Rating: Excellent!

Reply
By Ram Nivas Giri on 13-Feb-2006
doing a project of in bio-informatic tools & databases(Matlab)..... need help.i hav computer background but new in Bio field.
Rating: n/a

Reply
By soni on 08-Jan-2006
i would like to know how to design a primer to amplify a spacer region between two genes in chloroplast genome of centella. How to use the bioinformatics tool for this?
Rating: n/a

Reply
By D.Gopi on 28-Jul-2005
doing a project in bio-informatic tools & databases, need help.
Rating: Very Good

Reply
By anand mishra on 05-May-2005
what is codon optimization problem
Rating: Very Good

Reply
By bharti on 03-Mar-2005
Doing the Project of M.Sc Bio-Informatics on codon usage,need help
Rating: Very Good

Reply


Please Login or Register to Post