RNA analysis tools and programs

This is a collection of RNA analysis tools from Pasteur Institute BioWeb.

MFOLD: prediction of RNA Secondary Structure by Energy Minimization (Zuker) (advanced form)
Vienna RNA package (documentation)
RNAfold: calculate secondary structures of RNAs (advanced form)
RNAeval: calculate energy of RNA sequences on given secondary structure (advanced form)
RNAheat: calculate specific heat of RNAs (advanced form)
RNAdistance: calculate distances of RNA secondary structures (advanced form)
RNApdist: calculate distances of thermodynamic RNA secondary structures ensembles (advanced form)
RNAinverse: find RNA sequences with given secondary structure (advanced form)
RNAsubopt: calculate suboptimal secondary structures of RNAs (advanced form)
tRNAscan-SE: detection of transfer RNA genes (advanced form)
FAStRNA: predicts potential tRNA genes in genomic DNA sequences. FAStRNA-CM relies on a probabilistic model. FAStRNA-CLASS relies on a pattern-matching approach.
palindrome: Looks for inverted repeats in a nucleotide sequence (EMBOSS).
RNAGA: Prediction of common secondary structures of RNAs by genetic algorithm (Chen, Le, Maizel)
sirna: Finds siRNA duplexes in mRNA (EMBOSS).

Last update 11-Aug-2005, Rating n/a of 0 votes.