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Table of Standard Genetic Code new protocol
Table of Standard Genetic Code (NIH). ...

Determing DNA Quantity: Image QuaNT protocol
Procedure on how to quantify DNA in gel using image quant program. (Genome lab, UC davis). ...

Vector NTI 10 tutorial and user guide new protocol
One of the most useful programs for basic DNA analysis and for laboratory maintenance of plasmid constructs and oligonucleotides is Vector NTI Advance 10.0, a computer program available from Invitrogen (http://www.invitrogen.com). The following is a short intr ...

Bioperl course for Bioinformatics review
Introduction to Bioperl (www.bioperl.org). This course introduces to the bioperl modules with examples and exercises. The course content has been upgraded to bioperl 1.0 (differences with bioperl version 0.7 are displayed in yellow color in the diagrams). Apar ...

Biocatalog - a biosoftware directory site
The Biocatalog is a software directory of general interest in molecular biology and genetics. Another project the DBcat at Infobiogen (the French EMBnet node) lists the databases in this domain. We have sometimes imported information from existing lists and ft ...

Halx: free lab information management system for structural biology new database
Acta Crystallogr D Biol Crystallogr. 2005 Jun;61(Pt 6):671-8. HalX: an open-source LIMS (Laboratory Information Management System) for small to large scale labs Jaime Prilusky, Eric Oeuillet, Nathalie Ulryck, Anne Pajon, Julie Bernauer, Isabelle Krimm, S ...

MARS: microarray analysis, retrieval, and storage system new database
BMC Bioinformatics. 2005 Apr 18;6(1):101. MARS: microarray analysis, retrieval, and storage system. Maurer M, Molidor R, Sturn A, Hartler J, Hackl H, Stocker G, Prokesch A, Scheideler M, Trajanoski Z. Institute for Genomics and Bioinformatics, Chri ...

Online integrated bioinformatics tools new database
Integrated bioinformatics tools from Malaysian Genomics Resource Centre. Tools: Searches nucleotide/protein sequences and presents results in a BLAST-like output. Searches protein and nucleotide sequences again ...

Multiple Sequence Alignment Tools new recommended software
Multiple sequence alignment analysis can be done using ClustalW and ClustalX programs including online or standalone tools. Tutorial on multiple sequence alignment (pdf) ...

Savvy: online plasmid drawing tool new recommended software
Scalable vector graphics and plasmid map drawing tool by Malay K Basu. (from bioinformatics.org) ...

Genome Browser new recommended software
The UCSC Genome Browser provides a rapid and reliable display of any requested portion of genomes at any scale, together with dozens of aligned annotation tracks (known genes, predicted genes, ESTs, mRNAs, CpG islands, assembly gaps and coverage, chromosomal b ...

Free EMBOSS server for molecular biology analysis package new recommended software
EMBOSS (European Molecular Biology Open Software Suite) is a suite of free software tools for sequence analysis. There are a wide variety of programs that make up the suite, ranging in application from database searching to presentation of sequence data. ...

Molecular evolution softwares and packages recommended software
1. http://evolution.genetics.washington.edu/phylip/software.html 248 of the phylogeny packages, and 28 free servers. 2. http://darwin.eeb.uconn.edu/links/category.php?id=8 3. http://dambe.bio.uottawa.ca/dambe.asp DAMBE: Data Analysis and Molecular ...

SMS The Sequence Manipulation Suite software
The Sequence Manipulation Suite is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. It is commonly used by molecular biologists, for teaching, and for program and algorithm testing. By Paul Stot ...

EMD interactive Signal Pathways (tool) software
Interactive maps for the following pathways (EMD Biosciences, Inc.): AKT/Protein Kinase B Alzheimer's Disease - Newly Updated! Angiogenesis Apoptosis Caspase Mediated Mitochondrial Erk/MAPK MAPK Family NF-kB Nitric Oxide p53 PKA Act ...

JaMBW 1.1 workbench suite for molecular biologist software
JaMBW1.1 is the Java based Molecular Biologist's Workbench ideated, coordinated by Luca I.G.TOLDO. Data Entry Sequence conversion: SeqIO (James Knight) Data Manipulation Reverse / Complement / Inverse your sequence (Luca Toldo) Shuffle [randomize it ...

NCBI blast 2.0 software
NCBI's sequence similarity search tool designed to support analysis of nucleotide and protein databases. URL:Blast 2.0 Rating: ***** OS: internet browser ...

BioEdit (for Windows) software
BioEdit is a biological sequence alignment editor written for Windows 95/98/NT. A rich, intuitive multiple document interface with many convenient features makes alignment, manipulation and viewing of sequences relatively quick and easy on your desktop compu ...

ConsInspector (for windows) software
The program ConsInspector predicts potential binding sites in sequences of unlimited length by comparing candidates with predefined consensus descriptions of protein binding sites. These consensus descriptions produced by the program ConsInd consist of the len ...

DNA for Windows! software
DNA for Windows is a compact, easy to use DNA analysis program, ideal for small-scale sequencing projects. It is particularly suited to working with chromatogram files from ABI machines, and is one of the few programs able to edit as well as view these files. ...

DNATools Ver 5.1 for win95/98/NT software
DNATools is a program package for routine handling and analysis of DNA and protein sequences. The package includes general facilities for sequence and contig editing, restriction enzyme mapping, translation, repeat identification, searching (sequences and the ...

Expression (for windows) software
Features: Sequence Annotation Graphical Sequence Map Restriction Analysis Primer Design and Analysis ORF Prediction Pattern Finding Reverse Translation Degenerate DNA/Protein Support GenBank Searching Pattern and Motif Identific ...

ABI GeneScan Files on PC top rated software
I am looking for a software which can convert the GeneScan Files (esp. the graphic) to a PC readable file. ... ... ...

Fast PCR primer design and sequencing software new software
Fast PCR software has specific, ready-to-use templates for many PCR and sequencing applications: (Dr. Alan H. Schulman Dr. Ruslan Kalendar, University of Helsinki) The software can be downloaded from the web page.  * Standard, inverse and long PCR - Loca ...

Genetic Analysis Software Lists software
A huge collection of Genetic Analysis Software available online. This list is compiled by Wentian Li , Lab of Statistical Genetics at Rockefeller University. URL: Genetic Analysis Software Lists ...

Analyse-it! add-in for Microsoft Excel software
A statistical analysis add-in software for Microsoft Excel. Analyse-it includes 14-parametric & 17-non-parametric statistical functions including multiple linear regression analysis, ANOVA, & chi-square statistics, plus a specialized statistical pack ...

Contig assembly program software
Click following link for question/answer. Link: Contig assembly ...

SiRNA design tools from Ambion software
siRNA Target Finder Find siRNA target sites in your mRNA of interest using the published recommendations of Tuschl and colleagues for siRNA design. Once identified, siRNA targets can be sent directly to one of the kit-specific design tools described be ...

Vector based siRNA design tool software
Tools include: *siRNA Target Finder: A software tool to identify unique candidate siRNA target sequence in your cDNA sequence. * siRNA Construct Builder: A software tool to build small hairpin insert from siRNA target for expression vector. * siRNA Sequ ...

WAM - Web Antibody Modelling new software
From the Centre for Protein Analysis and Design at the University of Bath. This web tool let you submit your sequence to construct 3D models of antibody Fv sequences using a combination of established theoretical methods together with the latest antibody st ...

ExPASy Proteomics tools software
Tools include: [Protein identification and characterization] [DNA -> Protein] [Similarity searches] [Pattern and profile searches] [Post-translational modification prediction] [Topology prediction] [Primary structure analysis] [Secondary structure ...

Find Degenerate Sites tool (Mac hqx file) software
Find Degenerate Sites tells you which restriction sites you can put into your gene without changing its protein sequence. It is a HyperCard stack with full internal documentation. (Dana Boyd, Harvard medical school). ...

The Sequence Manipulation Suite software
The Sequence Manipulation Suite is a collection of web-based programs for analyzing and formatting DNA and protein sequences. (Paul Stothard, University of Alberta). ...

Sequence Extractor software
Sequence Extractor generates a clickable restriction map and PCR primer map of a DNA sequence. Protein translations and intron/exon boundaries are also shown. Use Sequence Extractor to build DNA constructs in silico. (Bioinformatics.org) ...

GENOME CANADA lab information management system LIMS software
GENOME CANADA LIMS is a freely available, full-featured, platform-independent, scalable, web supported laboratory information management systems designed for various research labs, companies, universities, and research institutes. It provides a comprehensive ...

PrimerX: design of mutagenic primers for site-directed mutagenesis new software
PrimerX is a web-based program written to automate the design of mutagenic PCR primers for site-directed mutagenesis. Based on your input, PrimerX compares a template DNA sequence with a DNA or protein sequence that already incorporates the desired mutation. I ...

Online ANOVA statistic caculation software
Why not just use the t-test? The t-test tells us if the variation between two groups is "significant". Multiple t-tests are not the answer because as the number of groups grows, the number of needed pair comparisons grows quickly. ANOVA puts all the data into ...

AiO: Oligo ordering/Data Base and DNA/Protein programs new software
This is a free software package by Christiaan Karreman. AiO (All in One) integrates a number of standalone programs written between 1987 and 2004. They vary between programs that were written purely for database (DB) maintenance and graphic programs depicting ...

UCSC In-Silico PCR software
In-Silico PCR searches a sequence database with a pair of PCR primers. It uses an indexing strategy to do this quickly. (UCSF, Center for Biomolecular Science and Engineering) ...

BioQuery multiple database query tool new software
BioQuery is a bioinformatics software program that provides a single, powerful user interface for building search strategies for numerous different biomedical databases. BioQuery is also a full update service, allowing you to save your searches on our server, ...

CLC Free Workbench 1.0 Sequence Analysis new software
A free software from CLC bio. Multiple alignment of DNA, RNA, and proteins Open reading frame determination Translation from DNA to proteins (all genetic translation tables) Reports with residue composition, molecular weight and iso electric point (fo ...

The Scriptome Protocols for Manipulating Biological Data new software
The Scriptome is a set of tools that filter, format, and merge data in tabular or common biological formats. Use single tools to take a quick look at data, or string tools together in a "protocol" to explore the data more deeply. It can be run on Unix and Wind ...

Babelomics - Bioinformatics analysis suite for integrated genomic data analysis new software
Babelomics - Bioinformatics analysis suite for integrated genomic data analysis Babelomics is a complete suite of bioinformatics tools with methods of genomics data analysis (gene expression data normalization, data pre-processing, differential gene express ...

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