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        <title>Biowww.net RSS feed</title>
        <description><![CDATA[BioNews feeds from biowww dot net]]></description>
        <link>http://biowww.net/</link>
        <lastBuildDate>Fri, 16 May 2008 03:36:15 +0100</lastBuildDate>
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        <item>
            <title>RNA methods from scienceboard.net</title>
            <link>http://biowww.net/detail-374.html</link>
            <description>Protocol from Scientific Advisory Board (scienceboard.net).

content

10/17/2003  RNA from tissues.  
10/17/2003  Total cellular RNA  
10/17/2003  EXTRACTION AND PURIFICATION OF TOTAL RNA USING TRIzol  
10/19/2003  Native Gel Electrophoresis of R ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>mRNA purification protocol</title>
            <link>http://biowww.net/detail-263.html</link>
            <description>mRNA purification protocol from Breeden's lab. The mRNA purification steps include preparing oligo-dT cellulose column, total RNA elution and washing in the oligo-dT cellulose column, precipitation and recovering of mRNA. Buffer recipes for mRNA purification a ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>Differential display of mRNA analysis (Breeden's lab)</title>
            <link>http://biowww.net/detail-265.html</link>
            <description>Differential display of mRNA analysis (Breeden's lab).

Protocol link ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>Methods to Remove DNA Contamination from RNA Samples</title>
            <link>http://biowww.net/detail-612.html</link>
            <description>An ambion tech notes on how to remove DNA contamination from RNA preparations.

Genomic DNA false positive signals are easily identified by performing a &quot;no-RT&quot; control during RT-PCR. We can therefore assess the effectiveness of DNA removal methods by agaros ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>In Vitro Transcription Reverse Transcription</title>
            <link>http://biowww.net/detail-916.html</link>
            <description>PDF prootcol by Paul Kroeger from Marimoto lab at Northwestern University. ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>Ten Ways to Improve Your RNA Isolation</title>
            <link>http://biowww.net/detail-613.html</link>
            <description>A tech notes from Ambion. It gives suggestions on following ten aspects:

1. Use proper cell or tissue storage conditions.
2. Thoroughly homogenize samples. 
3. Pretreat homogenate before RNA isolation.
4.Choose the best RNA isolation method.
5. DNase tr ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>List of human house keeping gene</title>
            <link>http://biowww.net/detail-880.html</link>
            <description>In this short review authors summarized use of human house keeping gene in gene expression study. 

Human housekeeping genes are compact.
Eisenberg E, Levanon EY
Trends Genet. 2003 Jul ; 19(7): 362-5

This web page lists all popular house keeping genes b ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>TechNote on Working with RNA</title>
            <link>http://biowww.net/detail-878.html</link>
            <description>A technique bulletin describing the general guidance on working with RNA (Ambion Inc.). 

- Living with RNase.
- RNA storage.
- RNA precipitate
- RNA radioactivity incorporation and yield. ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>Plasmid DNA extraction from e.coli for digestion mapping clony screening</title>
            <link>http://biowww.net/detail-931.html</link>
            <description>Plasmid DNA extraction from e.coli for digestion mapping clony screening:

This protocol utilize the Qiagen buffer P1, P2 and P3 from Qiagen
plasmid purification kit. RNase must be added before use. It is cost
efficient since it doesn't use expensive plasm ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>Redissolving RNA Pellet</title>
            <link>http://biowww.net/detail-80.html</link>
            <description>I am working with total RNA from Chondrocyte cells. I am isolating the 
 RNA using TRizol Reagent and I am having a problem with the last step of 
 redissolving the RNA pellet. These cells have been put in 1.2% alginate 
 and cultured for 5 days and then ex ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>mRNA isolation kits</title>
            <link>http://biowww.net/detail-83.html</link>
            <description>I want to isolate mRNA from human B-Lymphocyte cell lines. Could somebody 
 suggest some mRNA isolation kits which has given good yields. I will be 
 using the mRNA for RT-PCR. ... ...
 ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>DNA contamination in RNA sample</title>
            <link>http://biowww.net/detail-93.html</link>
            <description>I'm trying to look for a efficient method to remove the DNA contamination in my total RNA samples. I'm working with a Gram-positive bacteria E. hirae and I'm trying to use the RNA for quantitative RT-PCR. 
 
I've used both the Gaunidium thiocyanate method an ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>how to make nuclease free water ?</title>
            <link>http://biowww.net/detail-95.html</link>
            <description>could anybody provide me with a short protocol on how to prepare nuclease 
 free water? I need it for PCR, RT-PCR and RNA extraction from plant tissues. 
 We have a milli-Q system and I don't want to use DEPC. ... ...
 
 ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>total RNA measurement</title>
            <link>http://biowww.net/detail-96.html</link>
            <description>what would be a best choice of RNA standard (origin, size, etc., maybe 
 even catalog #?) when comparing total RNA content in different species 
 (both pro- and eucaryotes). ... ...
 
 ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>RNA extraction</title>
            <link>http://biowww.net/detail-99.html</link>
            <description>I have isolated total RNA from non adherent cells with the TRIZOL reagent. 
 At the end of the procedure, I solubilized the pellet with DEPC-treated 
 water. After this, I measured OD 260 and 280 and calculated the ratio 
 260/280. This ratio should be 1.6  ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>Small scale TRIZOL extraction</title>
            <link>http://biowww.net/detail-205.html</link>
            <description>I'd very much appreciate if somebody lets me know a recommended volume of 
 TRIZOL for small size samples (10-20ul). 
 
 Click here for replies to this question ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>General reverse transcription troubleshooting guide</title>
            <link>http://biowww.net/detail-1099.html</link>
            <description>Low cDNA yield:

1. Check reverse transcription temperature. Different reverse transcriptase may require different reaction temperature, ranging from 37c to 65c.

2. RNA template is degraded or concentration is wrong. Use RNase inhibitor in the reac ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>RNA analysis tools and programs</title>
            <link>http://biowww.net/detail-1160.html</link>
            <description>This is a collection of RNA analysis tools from Pasteur Institute BioWeb.

MFOLD: prediction of RNA Secondary Structure by Energy Minimization (Zuker) (advanced form) 
Vienna RNA package (documentation) 
RNAfold: calculate secondary structures of RNAs (adv ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>Antisense technonology animation</title>
            <link>http://biowww.net/detail-38.html</link>
            <description>Flash antisense technonology animation.(University of Nebraska - Lincoln) ...</description>
            <author>biowww</author>
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