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        <title>Biowww.net RSS feed</title>
        <description><![CDATA[BioNews feeds from biowww dot net]]></description>
        <link>http://biowww.net/</link>
        <lastBuildDate>Tue, 22 Jul 2008 07:56:51 +0100</lastBuildDate>
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        <item>
            <title>Vector based siRNA design tool</title>
            <link>http://biowww.net/detail-321.html</link>
            <description>Tools include:

*siRNA Target Finder: A software tool to identify unique candidate siRNA target sequence in your cDNA sequence. 
*	siRNA Construct Builder: A software tool to build small hairpin insert from siRNA target for expression vector. 
*	siRNA Sequ ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>siRNA design tool using SVM</title>
            <link>http://biowww.net/detail-532.html</link>
            <description>A free online siRNA design tool using supporting vector machine algorithm (Chang bioscience).

Features:

1.Rational siRNA design by rules and by SVM learning.
2.Designs oligos for a variety of tech platforms.
3.Eliminates unintended targets.
4.Avoids S ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>shRNA oligos design tool for shRNA based expression vector</title>
            <link>http://biowww.net/detail-534.html</link>
            <description>A free online siRNA design tool (Gene Link inc.).

The guidline for using this tool is given in this link:
siRNA Design Strategies:
The strategy for siRNA design is based on our present understandi ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>The design and exogenous delivery of siRNA for post-transcriptional gene silencing</title>
            <link>http://biowww.net/detail-535.html</link>
            <description>siRNA target finder online tool (Ambion)

This tool employs the early, basic siRNA design guidelines first described by Tuschl and colleagues. In general, Ambion scientists find that ~50% of  ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>siRNA selector tool from wistar institute</title>
            <link>http://biowww.net/detail-574.html</link>
            <description>Computing tool provided by Wistar Institute, University of Pennsylvania.

A set of rules was used for evaluating siRNA functionality based on thermodynamics parameters (Khvorova A et al., 2003, Schwarz et al 2003) and sequence-related determinants developed  ...</description>
            <author>biowww</author>
        </item>
        <item>
            <title>Sfold web tool: siRNA, antisense, trans-cleaving ribozymes design tool</title>
            <link>http://biowww.net/detail-797.html</link>
            <description>Sfold predicts probable RNA secondary structures, assesses target accessibility, and provides tools for the rational design of RNA-targeting nucleic acids.

References:

Ding, Y., Chan, C.Y., and Lawrence, C.E. (2004) Sfold web server for statistical foldi ...</description>
            <author>biowww</author>
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